Alex Komissarov

Fast Tandem Repeat Finder

CoLT — Conflict-driven Lattice Transformer: sound neural reasoners diagnosed (one-shot amortization, first-pass poisoning, the augmentation interaction) and the constructive hybrid: learned heuristics over an exact CSP engine. Frozen protocol + raw results.

Independent reimplementation of the Lattice Deduction Transformer (arXiv:2605.08605) — sound deduction on a candidate-set lattice. Reproducible + transparent.

Fast zero-dependency IUPAC motif scanner (both strands, BED) with a CENP-B box mode: arm/spacer decomposition + Hamming-to-canonical scoring