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Builder

Kevin Jacobs

@bioinformed · Ann Arbor & SF Bay area

GitHub
Followers
41
Public repos
8
Stars (recent)
51
Ecosystems
1

Projects

Repositories this builder owns.

vgraph
vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph representation of genomic variants in to precisely compare complex variants that are refractory to comparison by conventional comparison methods.
43
htslib
C library for high-throughput sequencing data formats
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boltons
Like builtins, but boltons. Constructs/recipes/snippets that would be handy in the standard library. Nothing like Michael Bolton.
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pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

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Others building in the same ecosystem.

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1
varcomp
Tools for calling and comparing variants from simulated read sets
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esa
Python library implementing Enhanced Suffix Arrays and related algorithms
1
glu-genetics
Automatically exported from code.google.com/p/glu-genetics
6
server
A reference implementation of the APIs defined in the schemas repository.
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Recent activity

Most recently pushed work.

  • bioinformed/vgraph
    pushed 58mo ago
  • bioinformed/htslib
    pushed 108mo ago
  • bioinformed/boltons
    pushed 111mo ago
  • bioinformed/pysam
    pushed 115mo ago