cbravo

Model zoo for genomics

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

Formalizing and benchmarking open problems in single-cell genomics

Topic modeling with latent Dirichlet allocation using Gibbs sampling