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segger

GNN-based cell segmentation of spatial transcriptomics data

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5

Last push

3mo ago

Recent commits

Latest commits.

Batch save_anndata parameter
ffbe813tobiaspk4mo ago
Merge pull request #19 from dpeerlab/pr-4
afcd9f4Tobias Krause4mo ago
Add save_anndata parameter to ISTSegmentationWriter and update segment function.
e8ee578mossishahi5mo ago
Merge pull request #15 from dpeerlab/bugfix/threshold_convergence
fa72c5cTobias Krause4mo ago
nicer outputs
dcab037tobiaspk4mo ago

Change default to Q50 for failed to converge genes

2a3a63atobiaspk4mo ago

Use Q80 to fill in. Add 'convergence' column.

dd7c534tobiaspk4mo ago

increase default max_iter

ecf7df7tobiaspk4mo ago

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